"Ribosomal Database Project"

University Of Illinois, Urbana-Champaign

SSU Eukaryotic rRNA Taxonomic List -- 3.13-3.13.3.4.2 

                                    The Ribosomal Database Project 

Department of Microbiology, University of Illinois at Ubana-Champaign, USA.
                                  Release Number 7.0 -- July 31, 1998 

Return to SSU Eukaryotic rRNA Taxonomic List 

3.13 ALVEOLATA 

3.13.1 APICOMPLEXA 

3.13.1.1 PIROPLASMIDA_(PIROPLASMIDS) 

3.13.1.1.1 BABESIIDAE_SUBGROUP_I 

     [1108] Babs.bovi5 Babesia bovis str. Mo7 (apicomplexan) 
     [1109] Babs.bovi2 Babesia bovis str. vaccine (apicomplexan) 
     [1110] Babs.bovis Babesia bovis str. Samford (apicomplexan) 
     [1111] Babs.bovi3 Babesia bovis str. vaccine (apicomplexan) 
     [1112] Babs.spBos Babesia sp. (apicomplexan) 
     [1113] Babs.bigem Babesia bigemina str. Mexico (apicomplexan) [gene = A] 
     [1114] Babs.bige2 Babesia bigemina str. Mexico (apicomplexan) [gene = B] 
     [1115] Babs.bige3 Babesia bigemina str. Mexico (apicomplexan) [gene = C] 
     [1116] Babs.cabal Babesia caballi (apicomplexan) 
     [1117] Babs.odoco Babesia odocoilei (apicomplexan) 
     [1118] Babs.divr4 Babesia divergens (apicomplexan) 
     [1119] Babs.divr3 Babesia divergens (apicomplexan) 
     [1120] Babs.divrg Babesia divergens (apicomplexan) 
     [1121] Babs.divr2 Babesia divergens (apicomplexan) 
     [1122] Babs.canis Babesia canis (apicomplexan) 
     [1123] Babs.cani2 Babesia canis (apicomplexan) 

LOCUS       Babs.odoco   7872 bp    RNA             RNA       02-JUL-1998 
DEFINITION  Babesia odocoilei (apicomplexan). 
REFERENCE   1 
  AUTHORS   Holman,P.J. 
  TITLE     Comparative Study of Cervid Babesia Isolates 
  JOURNAL   Thesis, Veterinary Pathobiology, Texas A&M University (1994) 
COMMENT 
            Corresponding GenBank entry: U16369|g571461 
            common_name= apicomplexan 
BASE COUNT      440 a    345 c    440 g    498 u   6149 others 
ORIGIN 
        1 .........A ACCUGGU-UG A--U-CC-UG CC-AG-UA-G U-CAUAUGCU -UGU-CUU-A 
       61 AA-GAUUAA- -GCCAUGC-A UUG-CUAAGU ---------- -------ACA AACUUUUUA- 
      121 ---------- ----CGGUGA A--------- ---------- ---------- ---------A 
      181 C-U-----GC GAA-UGGC-U -C-AUUA-CA -ACAG-UUAU -AG-UUUCU- -UUGG-UA-- 
      241 UUCGUUUUC- ---------- ---------- --------CA -U-GG-AUAA C-C-GUGC-- 
      301 UA-AUU-GUA GGGCUAA-U- --ACAAGUUC GA-------- ---------- ---------- 
      361 --G-GCC--- ---------- ---------- ---------- ---------- -----UUUUU 
      421 ---------- ---------- ---------- ---------- ---------- ---------- 
      481 ---------- ---------- ---------- ---------- ---------- ---------- 
      541 ----GG-CG- ---GCGU-UU -AUUA-GUUC UAA------- --ACC-A-U- ---------- 
      601 ---------- ---------- ---------- ---------- --------CC GUUUU----- 
      661 ---------- ---------- ---------- ---------- ---------- ---------- 
      721 ---------- ---------- ---------- ---------- ---------- ---------- 
      781 ---------- ---------- ---------- ---------- ---------- ---------- 
      841 ---------- ---------- ---------- ---------- ---------- -GG------- 
      901 ---------- ---------- ---------- ---------- ---------- ---------- 
      961 UUU--U-CGG U---GAUUCA --UA-AUAAA CUCGCGAA-- -------UC- G----C---- 
     1021 -AA------- ---------U UUA------- ---------- ---------- ---------- 
     1081 ---------- ---------- ------UUG- -C-GA-UGGA -CCA-UUC-A AGUUU-CUGA 
     1141 --CCC-AUC- AG-CU--UG- -ACGGUA-GG -GUAU-UGG- CCU----ACC G-AGGC-AG- 
     1201 CAA-CGGG-U -AACGGGGAA U-UAGGGUUC -GAUU-CCGG A-GAGGG-AG -C-CUG---- 
     1261 ---------- ---------- ---------- ---------- ---------- ---------- 
     1321 ---------- ---------- ---------- ---------- ---------- ---------- 
     1381 ---------- ---------- ---------- ---------- ---------- ---------- 
     1441 ---------- ---------- ---------- ---------- ---------- ---------- 
     1501 ---------- ---------- ---------- ---------- ---------- ---------- 
     1561 ---------- ---------- ---------- ---------- ---------- ---------- 
     1621 ---------- ---------- ---------- ---------- ---------- ---------- 
     1681 ---------- ---------- ---------- ---------- -AGAAA-CGG C-UACCACA- 
     1741 UC-CAAGGAA -GGCA-GCA- GGC-GC--GC A-AAUU-ACC C-AA-UCCUG ----ACA--- 
     1801 -C-AGGGA-G GUA-GUGAC- AAG------- ----AAAUAA -CAAU----- -AC-AG---- 
     1861 -GGC------ --AAUU---- -G-U-C---- -U--UG-UAA -UUG------ ---------- 
     1921 ---------- ---------- ---------- ---------- -------GAA UGAUG----- 
     1981 ------G-UG ACCU-AAACC CUCAC----- -------CAG A-GU-AACAA UUGGAG-GG- 
     2041 -CAA-G-U-C -UGGU-G-CC A-GC-A-GCC -GCGG-UAA- UUCCAGC-U- CCAAU-AG-C 
     2101 GUAU-AUU-- AAACUUGU-U --GCAGUU-- ----AAAAAG CUCGUAGUUG ---------- 
     2161 ---------- ---------- ---------- ---------- ---------- -----AAUUU 
     2221 C-U--G-CG- ---------- ---------- ---------- ---------- ---------- 
     2281 ---------- ---------- ---------- ---------- ---------- ---------- 
     2341 ---------- ---------- ---------- ---------- ---------- ---------- 
     2401 ---------- ---------- ---------- ---------- ---------- ---------- 
     2461 ---------- ---------- ---------- ---------- -UCACCG--U -A-UU----- 
     2521 ---------- ---------- ---------- ---------- ---------- ---------- 
     2581 ---------- ---------- ---------- ------UUG- AC----UUUU ------GUCG 
     2641 A--------- ---------- ---------- ---------- ---------- ---------- 
     2701 ---------- ---------- ---------- ---------- ---------- ---------- 
     2761 --------CU G-U------C GGUUU----- CG-CU----- -----UUU-- ---------- 
     2821 ---------- --G-GGA--- --UUUA---- -UC-C--C-- ---------- ---------- 
     2881 ---------- --UUUUUACU UUG-AGAAAA U-UAGAGU-G UUU-C-AA-G -C-AGAC--- 
     2941 U-UU------ ---------- ---------- ---------- ---UGUC--- UUGAAUAC-U 
     3001 U-CAGCA-UG G-AAUAAU-A GAGU-AGGA- C--U-UUGG- -U-------- ---------- 
     3061 ---------- ---------- ---------- ---------- ---------- ---------- 
     3121 ---------- --------UC UA--UUU--U GUUGGUU--- ---------- ---------- 
     3181 ---------- ---------- ---------- ---------- ---------- ---------- 
     3241 ---------- ---------- ---------- ---------- ---------- ---------- 
     3301 ---------- ---------- ---------- ---------- ---------- ---------- 
     3361 ------UGUG AACC---UUA G-UAA-UGGU UAAUA-GGAA C-GGUU---- ---------G 
     3421 GGGGCA-UU- CG--UA-U-U UAAC-U-G-U C-A-GAG-GU GAAA-UUC-U UAGAUUUG-U 
     3481 UA-A-AG-AC GAAC-UACUG C-GAAA--GC A---UUUG-C C-AAG----- ---GACGUUU 
     3541 U-C--AU-UA A-UC-AA-GA A-CGAAA--G UUAGGG-GAU -CGAA-GACG --AUCA-G-A 
     3601 UAC-C-GU-- CGUAGUCCU- A--AC-CA-U -AAACUAU-G -CCGACU-A- GGG------- 
     3661 -----AU--- ----UGGAGG U----C---- -GU-C----- ---------- --AUUUUUCC 
     3721 ---------- ---------- ---------- ---------- ---------- ---------- 
     3781 ---------- ---------- ---------- ---------- ---------- ---------- 
     3841 ---------- -GAC----UC --C-UUCA-- ----GCA--- --------CC U-UGA----- 
     3901 ---------- GAGAAA-UC- A----AAG-U CUU-UGGG-U -UCU-GGGGG -GAG-UAUGG 
     3961 U-C-GCAA-G GC-UGAA-AC UU-AAA---- --GGAA-UUG -ACGGAA-GG G-CA--CCA- 
     4021 CC-A-GGCGU ---------- ---------- ---------- ---------- ---------- 
     4081 ---------- ---------- ---------- ---------- ---------- ---------- 
     4141 ---------- ---------- ---------- ---------- ---------- ---------- 
     4201 ---------- ---------- ---------- ---------- ---------- ---------- 
     4261 ---------- ---------- ---------- ---------- ---------- ---------- 
     4321 ---------- ---------- ---------- ---------- ---------- ---------- 
     4381 ---------- ---------- ---------- ---------- ---------- ---------- 
     4441 ---------- ---------- ---------- --GGAG-C-- CU-GCGG-C- UU-AA-UUUG 
     4501 -ACUCAA-CA -CGG-G---G AAACUCA-CC -AGGUC---- ---------- ---------- 
     4561 ---------- ---------- ---------- -CA-G-AC-A AU-G-UUAGG AUU-G-ACA- 
     4621 GA--UUGAUA GC--UCUUU- CUUGAUU-C- UUUG-GG-UG ---------- ---------- 
     4681 ---------- ---------- ---------- ---------- ---------- ---------- 
     4741 ---------- ---------- ---------- ---------- ---------- ---------- 
     4801 ---------- ---------- ---------- ---------- ---------- ---------- 
     4861 ---------- ---------- ---------- ---------- ---------- ---------- 
     4921 ---------- ---------- ---------- ---------- ---------- ---------- 
     4981 ---------- ---------- ---------- ---------- ---------- ---------- 
     5041 ---------- ---------- ---------- ---------- --------GU -GGUG-CAUG 
     5101 GCC-GU-UC- UUA--GUUGG -U-GGA-GUG A-UUUGU-CU --GG-UUAAU U--CCGUU-A 
     5161 AC-GAA-C-G AGACC-UU-A A-CCU-GCUA A-CUA-G-UG ------CCC- -----GU-GA 
     5221 ---------- ---------- ---------- ---------- ---------- ---------- 
     5281 ---------- ---------- ---------- ---------- ---------- ---------- 
     5341 ---------- ---------- ---------- ---------- ---------- ---------- 
     5401 ---------- ---------- ---------- ---------- ---------- ---------- 
     5461 ---------- ---------- ---------- --------GA AGGUUCGUCC G----UUAC- 
     5521 --GGG----U --U----G-- ------CU-U C-UU-AGAGG -GA---CUU- U-GCGGC--- 
     5581 ---------- ---------- ---------- ---------- ---------- ---------- 
     5641 ---------- UCUAA-GCCG C-A-AGGAAG -UUUAAGGC- AAUAACAGG- UCUG-UG-AU 
     5701 GCCC-UU--- -AG-AUG-UC C-UGGG-CUG -CACGCGCGC UA-CACU-GA -UGCAU-U-C 
     5761 AU-CG-AG-U UUUAU----- ---------- ---------- ---------- ---------- 
     5821 ---------- ---------- ---------- ---------- -------CCC ------U-GC 
     5881 CC--GAAA-- GG-GC----U --GGG-UAAU --CU-U--UA -GU-AU-GC- AU-C-G-UG- 
     5941 ACG-GGGAU- UGA---UU-U U-UGCAAUU- C-UAAAUCA- UG-AA-C-GA GGA-AUGCC- 
     6001 U-AGUA-U-G C-GCA-AG-U CAUCAG--CU U-GAGC-A-G -AUUACGU-C CC-UGCCCUU 
     6061 UGUA-CACAC C--GC-CCGU C-G-C-U-C- C-U-ACCGA- UC--GAGU-G A-UC-C-GG- 
     6121 UGAAUU-AUU -CGGA----- --CCG-U-GG CUUUU----- ---CCGA--- ---------- 
     6181 ---------- ---------- ---------- ----UUCG-- --UC-GG--- ---------- 
     6241 ---------- --------UU UUG--C-C-U A-GG---GAA G---UCUC-G UGAA-CCU-U 
     6301 A-U-CA-CUU AA-AGGA--- AGG-AGAAG- UCGUAA--C- AAGG-U---- ---------- 
     6361 ---------- ---------- ---------- ---------- ---------- ---------- 
     6421 ---------- ---------- ---------- ---------- ---------- ---------- 
     6481 ---------- ---------- ---------- ---------- ---------- ---------- 
     6541 ---------- ---------- ---------- ---------- ---------- ---------- 
     6601 ---------- ---------- ---------- ---------- ---------- ---------- 
     6661 ---------- ---------- ---------- ---------- ---------- ---------- 
     6721 ---------- ---------- ---------- ---------- ---------- ---------- 
     6781 ---------- ---------- ---------- ---------- ---------- ---------- 
     6841 ---------- ---------- ---------- ---------- ---------- ---------- 
     6901 ---------- ---------- ---------- ---------- ---------- ---------- 
     6961 ---------- ---------- ---------- ---------- ---------- ---------- 
     7021 ---------- ---------- ---------- ---------- ---------- ---------- 
     7081 ---------- ---------- ---------- ---------- ---------- ---------- 
     7141 ---------- ---------- ---------- ---------- ---------- ---------- 
     7201 ---------- ---------- ---------- ---------- ---------- ---------- 
     7261 ---------- ---------- ---------- ---------- ---------- ---------- 
     7321 ---------- ---------- ---------- ---------- ---------- ---------- 
     7381 ---------- ---------- -UUCC-GUA- ---------- ---------- ---------- 
     7441 ---------- ---------- ---------- ---------- ---------- ---------- 
     7501 ---------- ---------- ---------- ---------- ---------- ---------- 
     7561 ---------- ---------- ---------- ---------- ---------- ---------- 
     7621 ---------- ---------- ---------- ---------- ---------- ---------- 
     7681 ---------- ---------- ---------- ---------- ---------- ---------- 
     7741 ---------- ---------- ---------- ---------- ---------- ---------- 
     7801 ---------- ---------- --------GG -UGAA-CCU- GCAGAAG-GA UC~~~~~~~~ 
     7861 ~~~~~~~~~~ ~~